CN.stream               CN.stream
CNstream-package        An R package for the identification and
                        genotyping of copy number polymorphisms using
                        Illumina microarrays.
cnv.findlimits          Given a 1D-GMM with N components, computes the
                        intersection point between two components.
cnv.genotype            CNV analysis
cnv.gmm                 Fits GMM model to the data and assigns CNV
                        scores.
cnv.init                GMM initialization for CNV analysis
cnv.plot.gmm            Draws CNV models
emgmm.e_step            E-STEP GMM
emgmm.em                GMM Expectation-Maximization algorithm
emgmm.m_step            M-STEP GMM
emgmm.pdfgauss          GMM PDF EVALUATION
genotype.compute        SNP genotyping
genotype.findpeaks      Search for maxima over the histogram
genotype.marker         SNP genotyping
genotype.peaks          genotype.peaks
genotype.plot.pdf       Plots SNP genotype models
genotype.plot.result    SNP genotyping results plot
marker.analysis         Single-locus chi-square association test.
norm_gt                 Intensity scaling
preprocessing           Plate normalization and channel intensity
                        scaling
preprocessing.compute_fi
                        Coordinate transformation to B-allele frequency
                        and absolute intensity
preprocessing.compute_inorm
                        Intensity scaling values
segment.analysis        Intensity scaling
segment.plot            Intensity scaling
